IL_8VS9_167

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

8VS9|1|23S|U|2111, 8VS9|1|23S|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VS9|1|23S|G|2110
8VS9|1|23S|U|2111
8VS9|1|23S|G|2112
8VS9|1|23S|U|2113
8VS9|1|23S|A|2114
8VS9|1|23S|G|2115
8VS9|1|23S|G|2116
8VS9|1|23S|A|2117
8VS9|1|23S|U|2118
8VS9|1|23S|A|2119
8VS9|1|23S|G|2120
8VS9|1|23S|G|2121
*
8VS9|1|23S|C|2177
8VS9|1|23S|C|2178
8VS9|1|23S|C|2179

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain ETRN

Transfer RNA; tRNA

Chain L1

50S ribosomal protein L1