IL_8VS9_169

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAG*CGACCUUGAAAUAC

Length

18 nucleotides

Bulged bases

8VS9|1|23S|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VS9|1|23S|G|2124
8VS9|1|23S|G|2125
8VS9|1|23S|A|2126
8VS9|1|23S|G|2127
*
8VS9|1|23S|C|2161
8VS9|1|23S|G|2162
8VS9|1|23S|A|2163
8VS9|1|23S|C|2164
8VS9|1|23S|C|2165
8VS9|1|23S|U|2166
8VS9|1|23S|U|2167
8VS9|1|23S|G|2168
8VS9|1|23S|A|2169
8VS9|1|23S|A|2170
8VS9|1|23S|A|2171
8VS9|1|23S|U|2172
8VS9|1|23S|A|2173
8VS9|1|23S|C|2174

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain ETRN

Transfer RNA; tRNA

Chain L1

50S ribosomal protein L1