IL_8VS9_170

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUUUGAAGU*AUGGAGC

Length

17 nucleotides

Bulged bases

8VS9|1|23S|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VS9|1|23S|G|2128
8VS9|1|23S|C|2129
8VS9|1|23S|U|2130
8VS9|1|23S|U|2131
8VS9|1|23S|U|2132
8VS9|1|23S|G|2133
8VS9|1|23S|A|2134
8VS9|1|23S|A|2135
8VS9|1|23S|G|2136
8VS9|1|23S|U|2137
*
8VS9|1|23S|A|2154
8VS9|1|23S|U|2155
8VS9|1|23S|G|2156
8VS9|1|23S|G|2157
8VS9|1|23S|A|2158
8VS9|1|23S|G|2159
8VS9|1|23S|C|2160

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L1