IL_8VS9_173

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCU*AGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCU,AGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_173 not in the Motif Atlas

Geometric match to IL_1YZ9_001

Geometric discrepancy: 0.2373

The information below is about IL_1YZ9_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8VS9|1|23S|C|2300
8VS9|1|23S|C|2301
8VS9|1|23S|U|2302
*
8VS9|1|23S|A|2314
8VS9|1|23S|G|2315
8VS9|1|23S|G|2316

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain 5S

5S ribosomal RNA; 5S rRNA

Chain L05

50S ribosomal protein L5