3D structure

PDB id
8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CCU*AGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: CCU,AGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VS9_173 not in the Motif Atlas
Geometric match to IL_1YZ9_001
Geometric discrepancy: 0.2373
The information below is about IL_1YZ9_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

8VS9|1|23S|C|2300
8VS9|1|23S|C|2301
8VS9|1|23S|U|2302
*
8VS9|1|23S|A|2314
8VS9|1|23S|G|2315
8VS9|1|23S|G|2316

Current chains

Chain 23S
23S ribosomal RNA

Nearby chains

Chain 5S
5S ribosomal RNA; 5S rRNA
Chain L05
50S ribosomal protein L5

Coloring options:


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