3D structure

PDB id
8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CGAG*CGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VS9_174 not in the Motif Atlas
Homologous match to IL_5J7L_333
Geometric discrepancy: 0.1413
The information below is about IL_5J7L_333
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.15
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

8VS9|1|23S|C|2350
8VS9|1|23S|G|2351
8VS9|1|23S|A|2352
8VS9|1|23S|G|2353
*
8VS9|1|23S|C|2364
8VS9|1|23S|G|2365
8VS9|1|23S|A|2366
8VS9|1|23S|G|2367

Current chains

Chain 23S
23S ribosomal RNA

Nearby chains

Chain L18
50S ribosomal protein L18
Chain L27
50S ribosomal protein L27
Chain L35
50S ribosomal protein L35

Coloring options:


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