IL_8VS9_176

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_176 not in the Motif Atlas

Geometric match to IL_4WF9_089

Geometric discrepancy: 0.2002

The information below is about IL_4WF9_089

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8VS9|1|23S|A|2453
8VS9|1|23S|G|2454
*
8VS9|1|23S|C|2498
8VS9|1|23S|C|2499
8VS9|1|23S|U|2500

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain ATRN

Transfer RNA; tRNA

Chain L03

50S ribosomal protein L3