IL_8VS9_203
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUGCGAAACC*GAUGUAGGA
- Length
- 19 nucleotides
- Bulged bases
- 8VS9|1|TMRN|A|32, 8VS9|1|TMRN|A|33
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VS9|1|TMRN|U|27
8VS9|1|TMRN|U|28
8VS9|1|TMRN|G|29
8VS9|1|TMRN|C|30
8VS9|1|TMRN|G|31
8VS9|1|TMRN|A|32
8VS9|1|TMRN|A|33
8VS9|1|TMRN|A|34
8VS9|1|TMRN|C|35
8VS9|1|TMRN|C|36
*
8VS9|1|TMRN|G|318
8VS9|1|TMRN|A|319
8VS9|1|TMRN|U|320
8VS9|1|TMRN|G|321
8VS9|1|TMRN|U|322
8VS9|1|TMRN|A|323
8VS9|1|TMRN|G|324
8VS9|1|TMRN|G|325
8VS9|1|TMRN|A|326
Current chains
- Chain TMRN
- TMRN
Nearby chains
- Chain 23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain L05
- 50S ribosomal protein L5
- Chain L31
- Large ribosomal subunit protein bL31
- Chain S13
- 30S ribosomal protein S13
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