IL_8VS9_215

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_215 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.2412

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8VS9|1|16S|U|409
8VS9|1|16S|G|410
8VS9|1|16S|A|411
8VS9|1|16S|A|412
8VS9|1|16S|G|413
8VS9|1|16S|A|414
8VS9|1|16S|A|415
8VS9|1|16S|G|416
*
8VS9|1|16S|U|427
8VS9|1|16S|G|428
8VS9|1|16S|U|429
8VS9|1|16S|A|430
8VS9|1|16S|A|431
8VS9|1|16S|A|432
8VS9|1|16S|G|433

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S04

30S ribosomal protein S4