IL_8VS9_224

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8VS9|1|23S|U|846, 8VS9|1|23S|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_224 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.3644

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

8VS9|1|23S|A|844
8VS9|1|23S|A|845
8VS9|1|23S|U|846
8VS9|1|23S|U|847
8VS9|1|23S|C|848
*
8VS9|1|23S|G|930
8VS9|1|23S|U|931
8VS9|1|23S|U|932
8VS9|1|23S|A|933
8VS9|1|23S|U|934

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L30

Large ribosomal subunit protein uL30