IL_8VS9_227

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGC*GAUG

Length

7 nucleotides

Bulged bases

8VS9|1|23S|A|1981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_227 not in the Motif Atlas

Geometric match to IL_8VTW_014

Geometric discrepancy: 0.1984

The information below is about IL_8VTW_014

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8VS9|1|23S|U|1769
8VS9|1|23S|G|1770
8VS9|1|23S|C|1771
*
8VS9|1|23S|G|1980
8VS9|1|23S|A|1981
8VS9|1|23S|U|1982
8VS9|1|23S|G|1983

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain 16S

Small subunit ribosomal RNA; SSU rRNA