IL_8VS9_229

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUA*UGUUUG

Length

11 nucleotides

Bulged bases

8VS9|1|23S|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VS9|1|23S|U|2457
8VS9|1|23S|G|2458
8VS9|1|23S|A|2459
8VS9|1|23S|U|2460
8VS9|1|23S|A|2461
*
8VS9|1|23S|U|2489
8VS9|1|23S|G|2490
8VS9|1|23S|U|2491
8VS9|1|23S|U|2492
8VS9|1|23S|U|2493
8VS9|1|23S|G|2494

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain ATRN

Transfer RNA; tRNA

Chain L16

50S ribosomal protein L16