IL_8VS9_233

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAGUGG*CAGCUGGC

Length

16 nucleotides

Bulged bases

8VS9|1|TMRN|G|256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VS9|1|TMRN|G|252
8VS9|1|TMRN|U|253
8VS9|1|TMRN|U|254
8VS9|1|TMRN|A|255
8VS9|1|TMRN|G|256
8VS9|1|TMRN|U|257
8VS9|1|TMRN|G|258
8VS9|1|TMRN|G|259
*
8VS9|1|TMRN|C|272
8VS9|1|TMRN|A|273
8VS9|1|TMRN|G|274
8VS9|1|TMRN|C|275
8VS9|1|TMRN|U|276
8VS9|1|TMRN|G|277
8VS9|1|TMRN|G|278
8VS9|1|TMRN|C|279

Current chains

Chain TMRN

TMRN

Nearby chains