IL_8VS9_234

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

8VS9|1|16S|G|64, 8VS9|1|16S|A|65

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_234 not in the Motif Atlas

Homologous match to IL_6CZR_117

Geometric discrepancy: 0.2227

The information below is about IL_6CZR_117

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.3

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

8VS9|1|16S|C|63
8VS9|1|16S|G|64
8VS9|1|16S|A|65
8VS9|1|16S|A|66
*
8VS9|1|16S|U|103
8VS9|1|16S|G|104

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S20

30S ribosomal protein S20