IL_8VSA_013

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8VSA|1|16S|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_013 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2263

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8VSA|1|16S|G|147
8VSA|1|16S|G|148
8VSA|1|16S|A|149
8VSA|1|16S|U|150
8VSA|1|16S|A|151
8VSA|1|16S|A|152
8VSA|1|16S|C|153
*
8VSA|1|16S|G|168
8VSA|1|16S|C|169
8VSA|1|16S|U|170
8VSA|1|16S|A|171
8VSA|1|16S|A|172
8VSA|1|16S|U|173
8VSA|1|16S|A|174
8VSA|1|16S|C|175

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S20

30S ribosomal protein S20