IL_8VSA_016

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8VSA|1|16S|U|244, 8VSA|1|16S|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_016 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1082

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8VSA|1|16S|G|242
8VSA|1|16S|A|243
8VSA|1|16S|U|244
8VSA|1|16S|U|245
8VSA|1|16S|A|246
8VSA|1|16S|G|247
*
8VSA|1|16S|C|277
8VSA|1|16S|G|278
8VSA|1|16S|A|279
8VSA|1|16S|C|280
8VSA|1|16S|G|281
8VSA|1|16S|A|282
8VSA|1|16S|U|283
8VSA|1|16S|C|284

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S12

30S ribosomal protein S12

Chain S17

Small ribosomal subunit protein uS17