IL_8VSA_028

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_028 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.2179

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

8VSA|1|16S|G|450
8VSA|1|16S|A|451
8VSA|1|16S|A|452
8VSA|1|16S|G|453
8VSA|1|16S|G|454
8VSA|1|16S|G|455
*
8VSA|1|16S|C|477
8VSA|1|16S|A|478
8VSA|1|16S|U|479
8VSA|1|16S|U|480
8VSA|1|16S|G|481
8VSA|1|16S|A|482
8VSA|1|16S|C|483

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S16

30S ribosomal protein S16