IL_8VSA_030

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_030 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.1864

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8VSA|1|16S|C|504
8VSA|1|16S|G|505
8VSA|1|16S|G|506
8VSA|1|16S|C|507
8VSA|1|16S|U|508
8VSA|1|16S|A|509
8VSA|1|16S|A|510
8VSA|1|16S|C|511
*
8VSA|1|16S|G|540
8VSA|1|16S|G|541

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S04

30S ribosomal protein S4

Chain S12

30S ribosomal protein S12

Chain TMRN

Transfer-messenger RNA; tmRNA