IL_8VSA_034

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUU*AGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_034 not in the Motif Atlas

Geometric match to IL_4KQ0_003

Geometric discrepancy: 0.1707

The information below is about IL_4KQ0_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8VSA|1|16S|G|588
8VSA|1|16S|U|589
8VSA|1|16S|U|590
*
8VSA|1|16S|A|649
8VSA|1|16S|G|650
8VSA|1|16S|C|651

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S08

30S ribosomal protein S8

Chain S15

Small ribosomal subunit protein uS15