IL_8VSA_045

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_045 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.1079

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

8VSA|1|16S|G|887
8VSA|1|16S|G|888
8VSA|1|16S|A|889
8VSA|1|16S|G|890
8VSA|1|16S|U|891
8VSA|1|16S|A|892
8VSA|1|16S|C|893
8VSA|1|16S|G|894
*
8VSA|1|16S|U|905
8VSA|1|16S|A|906
8VSA|1|16S|A|907
8VSA|1|16S|A|908
8VSA|1|16S|A|909
8VSA|1|16S|C|910

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S12

30S ribosomal protein S12