IL_8VSA_062
3D structure
- PDB id
- 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UACAAAG*CAUAAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VSA_062 not in the Motif Atlas
- Homologous match to IL_4LFB_051
- Geometric discrepancy: 0.249
- The information below is about IL_4LFB_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12056.1
- Basepair signature
- cWW-L-R-R-bif-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VSA|1|16S|U|1247
8VSA|1|16S|A|1248
8VSA|1|16S|C|1249
8VSA|1|16S|A|1250
8VSA|1|16S|A|1251
8VSA|1|16S|A|1252
8VSA|1|16S|G|1253
*
8VSA|1|16S|C|1284
8VSA|1|16S|A|1285
8VSA|1|16S|U|1286
8VSA|1|16S|A|1287
8VSA|1|16S|A|1288
8VSA|1|16S|A|1289
8VSA|1|16S|G|1290
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain S07
- 30S ribosomal protein S7
- Chain S09
- Small ribosomal subunit protein uS9
- Chain S10
- 30S ribosomal protein S10
- Chain S14
- Small ribosomal subunit protein uS14
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