3D structure

PDB id
8VSA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CCAGUAG*CGAACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VSA_083 not in the Motif Atlas
Homologous match to IL_5J7L_251
Geometric discrepancy: 0.1221
The information below is about IL_5J7L_251
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_26307.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

8VSA|1|23S|C|239
8VSA|1|23S|C|240
8VSA|1|23S|A|241
8VSA|1|23S|G|242
8VSA|1|23S|U|243
8VSA|1|23S|A|244
8VSA|1|23S|G|245
*
8VSA|1|23S|C|253
8VSA|1|23S|G|254
8VSA|1|23S|A|255
8VSA|1|23S|A|256
8VSA|1|23S|C|257
8VSA|1|23S|G|258

Current chains

Chain 23S
23S ribosomal RNA

Nearby chains

Chain L15
50S ribosomal protein L15
Chain L35
50S ribosomal protein L35

Coloring options:


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