IL_8VSA_092

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8VSA|1|23S|G|801, 8VSA|1|23S|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_092 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1283

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8VSA|1|23S|G|674
8VSA|1|23S|A|675
8VSA|1|23S|A|676
8VSA|1|23S|A|677
8VSA|1|23S|C|678
*
8VSA|1|23S|G|799
8VSA|1|23S|A|800
8VSA|1|23S|G|801
8VSA|1|23S|A|802
8VSA|1|23S|U|803
8VSA|1|23S|A|804
8VSA|1|23S|G|805
8VSA|1|23S|C|806

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L04

50S ribosomal protein L4

Chain L15

50S ribosomal protein L15