IL_8VSA_097
3D structure
- PDB id
- 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8VSA|1|23S|G|776, 8VSA|1|23S|A|788, 8VSA|1|23S|A|789
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VSA_097 not in the Motif Atlas
- Homologous match to IL_5J7L_265
- Geometric discrepancy: 0.1701
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8VSA|1|23S|G|775
8VSA|1|23S|G|776
8VSA|1|23S|G|777
*
8VSA|1|23S|C|787
8VSA|1|23S|A|788
8VSA|1|23S|A|789
8VSA|1|23S|U|790
8VSA|1|23S|C|791
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L02
- 50S ribosomal protein L2
- Chain L04
- 50S ribosomal protein L4
- Chain L22
- 50S ribosomal protein L22
- Chain L34
- 50S ribosomal protein L34
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