IL_8VSA_099

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAUU*AU

Length

6 nucleotides

Bulged bases

8VSA|1|23S|U|846

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_099 not in the Motif Atlas

Geometric match to IL_5J7L_267

Geometric discrepancy: 0.1725

The information below is about IL_5J7L_267

Detailed Annotation

90 degree turn

Broad Annotation

90 degree turn

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

8VSA|1|23S|A|844
8VSA|1|23S|A|845
8VSA|1|23S|U|846
8VSA|1|23S|U|847
*
8VSA|1|23S|A|933
8VSA|1|23S|U|934

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L30

Large ribosomal subunit protein uL30