IL_8VSA_173

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_173 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.1883

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8VSA|1|23S|C|2466
8VSA|1|23S|C|2467
8VSA|1|23S|A|2468
8VSA|1|23S|A|2469
8VSA|1|23S|G|2470
*
8VSA|1|23S|C|2480
8VSA|1|23S|G|2481
8VSA|1|23S|A|2482
8VSA|1|23S|C|2483
8VSA|1|23S|G|2484

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain ATRN

Transfer RNA; tRNA

Chain L16

50S ribosomal protein L16

Chain L36

50S ribosomal protein L36