IL_8VSA_180

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_180 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.1261

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8VSA|1|23S|C|2652
8VSA|1|23S|U|2653
8VSA|1|23S|A|2654
8VSA|1|23S|G|2655
8VSA|1|23S|U|2656
8VSA|1|23S|A|2657
8VSA|1|23S|C|2658
*
8VSA|1|23S|G|2663
8VSA|1|23S|G|2664
8VSA|1|23S|A|2665
8VSA|1|23S|C|2666
8VSA|1|23S|C|2667
8VSA|1|23S|G|2668

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L06

50S ribosomal protein L6