IL_8VSA_184

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

8VSA|1|23S|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_184 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.0903

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8VSA|1|23S|G|2737
8VSA|1|23S|A|2738
8VSA|1|23S|U|2739
8VSA|1|23S|A|2740
8VSA|1|23S|A|2741
8VSA|1|23S|G|2742
*
8VSA|1|23S|C|2762
8VSA|1|23S|G|2763
8VSA|1|23S|A|2764
8VSA|1|23S|A|2765
8VSA|1|23S|A|2766
8VSA|1|23S|C|2767

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L06

50S ribosomal protein L6

Chain L13

50S ribosomal protein L13

Chain L36

50S ribosomal protein L36