IL_8VSA_194
3D structure
- PDB id
- 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VSA_194 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.1056
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8VSA|1|5S|C|71
8VSA|1|5S|G|72
8VSA|1|5S|A|73
8VSA|1|5S|U|74
8VSA|1|5S|G|75
8VSA|1|5S|G|76
8VSA|1|5S|U|77
8VSA|1|5S|A|78
8VSA|1|5S|G|79
*
8VSA|1|5S|C|97
8VSA|1|5S|G|98
8VSA|1|5S|A|99
8VSA|1|5S|G|100
8VSA|1|5S|A|101
8VSA|1|5S|G|102
8VSA|1|5S|U|103
8VSA|1|5S|A|104
8VSA|1|5S|G|105
Current chains
- Chain 5S
- 5S ribosomal RNA
Nearby chains
- Chain 23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain L16
- 50S ribosomal protein L16
- Chain L25
- 50S ribosomal protein L25
Coloring options: