IL_8VSA_201

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGC*GCUU

Length

7 nucleotides

Bulged bases

8VSA|1|TMRN|U|131

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_201 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.2834

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

8VSA|1|TMRN|A|113
8VSA|1|TMRN|G|114
8VSA|1|TMRN|C|115
*
8VSA|1|TMRN|G|129
8VSA|1|TMRN|C|130
8VSA|1|TMRN|U|131
8VSA|1|TMRN|U|132

Current chains

Chain TMRN

TMRN

Nearby chains

Chain S03

30S ribosomal protein S3