IL_8VSA_202

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUC,GAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_202 not in the Motif Atlas

Geometric match to IL_1NBS_006

Geometric discrepancy: 0.251

The information below is about IL_1NBS_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8VSA|1|TMRN|C|141
8VSA|1|TMRN|U|142
8VSA|1|TMRN|C|143
*
8VSA|1|TMRN|G|176
8VSA|1|TMRN|A|177
8VSA|1|TMRN|G|178

Current chains

Chain TMRN

TMRN

Nearby chains

Chain S03

30S ribosomal protein S3