IL_8VSA_223

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_223 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1323

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8VSA|1|23S|U|1851
8VSA|1|23S|U|1852
8VSA|1|23S|A|1853
8VSA|1|23S|A|1854
8VSA|1|23S|U|1855
8VSA|1|23S|U|1856
8VSA|1|23S|G|1857
8VSA|1|23S|A|1858
8VSA|1|23S|U|1859
8VSA|1|23S|G|1860
*
8VSA|1|23S|U|1882
8VSA|1|23S|U|1883
8VSA|1|23S|G|1884
8VSA|1|23S|A|1885
8VSA|1|23S|U|1886
8VSA|1|23S|C|1887
8VSA|1|23S|G|1888
8VSA|1|23S|A|1889
8VSA|1|23S|A|1890
8VSA|1|23S|G|1891

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L1