IL_8VTU_084

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTU_084 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3492

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

8VTU|1|1A|G|2124
8VTU|1|1A|G|2125
8VTU|1|1A|A|2126
8VTU|1|1A|G|2127
*
8VTU|1|1A|C|2161
8VTU|1|1A|G|2162
8VTU|1|1A|C|2163
8VTU|1|1A|C|2164
8VTU|1|1A|G|2165
8VTU|1|1A|G|2166
8VTU|1|1A|U|2167
8VTU|1|1A|G|2168
8VTU|1|1A|A|2169
8VTU|1|1A|A|2170
8VTU|1|1A|A|2171
8VTU|1|1A|U|2172
8VTU|1|1A|A|2173
8VTU|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA