IL_8VTU_122
3D structure
- PDB id
- 8VTU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- GGACAAC*GCUAAUCC
- Length
- 15 nucleotides
- Bulged bases
- 8VTU|1|1a|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VTU_122 not in the Motif Atlas
- Homologous match to IL_5J7L_012
- Geometric discrepancy: 0.24
- The information below is about IL_5J7L_012
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.6
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8VTU|1|1a|G|147
8VTU|1|1a|G|148
8VTU|1|1a|A|149
8VTU|1|1a|C|150
8VTU|1|1a|A|151
8VTU|1|1a|A|152
8VTU|1|1a|C|153
*
8VTU|1|1a|G|168
8VTU|1|1a|C|169
8VTU|1|1a|U|170
8VTU|1|1a|A|171
8VTU|1|1a|A|172
8VTU|1|1a|U|173
8VTU|1|1a|C|174
8VTU|1|1a|C|175
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1t
- 30S ribosomal protein S20
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