IL_8VTU_213

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

8VTU|1|2A|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTU_213 not in the Motif Atlas

Homologous match to IL_8VTW_040

Geometric discrepancy: 0.063

The information below is about IL_8VTW_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12554.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

8VTU|1|2A|G|1031
8VTU|1|2A|A|1032
8VTU|1|2A|U|1033
8VTU|1|2A|G|1034
*
8VTU|1|2A|C|1121
8VTU|1|2A|G|1122
8VTU|1|2A|C|1123

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2Q

50S ribosomal protein L16