Motif IL_12554.2 Version IL_12554.2 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_009 | 5J7L | 0.3350 | 1 | Isolated non-canonical cWW pair | AA | SSU rRNA | G | 128 | A | 129 | A | 131 | * | U | 231 | G | 232 | C | 233 | cWW | cWW | cWW |
| 2 | IL_7D7V_003 | 7D7V | 0.3135 | 1 | Isolated non-canonical cWW pair | A | nadA RNA | C | 41 | A | 42 | U | 44 | * | G | 22 | G | 23 | G | 24 | cWW | cWW | cWW |
| 3 | IL_7D7W_003 | 7D7W | 0.2670 | 1 | Isolated non-canonical cWW pair | A | nadA RNA | C | 34 | A | 35 | C | 37 | * | G | 23 | G | 24 | G | 25 | cWW | cWW | cWW |
| 4 | IL_6TFF_003 | 6TFF | 0.1547 | 1 | Isolated non-canonical cWW pair | A | nadA RNA | C | 34 | A | 35 | C | 37 | * | G | 23 | G | 24 | G | 25 | cWW | cWW | cWW |
| 5 | IL_4K31_002 | 4K31 | 0.0809 | 1 | Isolated non-canonical cWW pair | C+B | RNA (23-mer) | A | 16 | A | 17 | G | 19 | * | C | 7 | G | 8 | U | 9 | cWW | cWW | cWW |
| 6 | IL_4K31_003 | 4K31 | 0.0000 | 1 | Isolated non-canonical cWW pair | B+C | RNA (23-mer) | A | 16 | A | 17 | G | 19 | * | C | 7 | G | 8 | U | 9 | cWW | cWW | cWW |
| 7 | IL_4WF9_041 | 4WF9 | 0.1683 | 1 | Isolated non-canonical cWW pair | X | LSU rRNA | G | 1075 | A | 1076 | G | 1078 | * | C | 1165 | G | 1166 | C | 1167 | cWW | ncWW | cWW |
| 8 | IL_7A0S_038 | 7A0S | 0.2212 | 1 | Isolated non-canonical cWW pair | X | LSU rRNA | G | 1042 | A | 1043 | G | 1045 | * | C | 1132 | G | 1133 | C | 1134 | cWW | ncWW | cWW |
| 9 | IL_5J7L_282 | 5J7L | 0.2099 | 1 | Isolated non-canonical cWW pair | DA | LSU rRNA | G | 1031 | A | 1032 | G | 1034 | * | C | 1121 | G | 1122 | C | 1123 | cWW | cWW | cWW |
| 10 | IL_8VTW_040 | 8VTW | 0.2009 | 1 | Isolated non-canonical cWW pair (H) | 1A | LSU rRNA | G | 1031 | A | 1032 | G | 1034 | * | C | 1121 | G | 1122 | C | 1123 | cWW | cWW | cWW |
| 11 | IL_4RUM_001 | 4RUM | 0.2864 | 1 | Isolated non-canonical cWW pair | A | NiCo riboswitch | G | 13 | A | 14 | C | 16 | * | G | 88 | A | 89 | C | 90 | cWW | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUG*CGC | 4 |
| CAGC*GGG | 2 |
| AAAG*CGU | 2 |
| GAAA*UGC | 1 |
| CAGU*GGG | 1 |
| GAGC*GAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*G | 4 |
| AA*G | 3 |
| AG*G | 3 |
| AG*A | 1 |
- Annotations
-
- Isolated non-canonical cWW pair (10)
- Isolated non-canonical cWW pair (H) (1)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.25 | Max 0.44
Coloring options: