RNA 3D Hub //

Motif IL_12554.2 Version IL_12554.2 of this group appears in releases 3.89 to 3.90

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_5J7L_0095J7L0.33501Isolated non-canonical cWW pairAA SSU rRNAG128A129A131*U231G232C233cWWcWWcWW
2 IL_7D7V_0037D7V0.31351AnadA RNAC41A42U44*G22G23G24cWWcWWcWW
3 IL_7D7W_0037D7W0.26701AnadA RNAC34A35C37*G23G24G25cWWcWWcWW
4 IL_6TFF_0036TFF0.15471AnadA RNAC34A35C37*G23G24G25cWWcWWcWW
5 IL_4K31_0024K310.08091Isolated non-canonical cWW pairC+BRNA (23-mer)A16A17G19*C7G8U9cWWcWWcWW
6 IL_4K31_0034K310.00001Isolated non-canonical cWW pairB+CRNA (23-mer)A16A17G19*C7G8U9cWWcWWcWW
7 IL_4WF9_0414WF90.16831Isolated non-canonical cWW pairX LSU rRNAG1075A1076G1078*C1165G1166C1167cWWncWWcWW
8 IL_7A0S_0387A0S0.22121Isolated non-canonical cWW pairX LSU rRNAG1042A1043G1045*C1132G1133C1134cWWncWWcWW
9 IL_5J7L_2825J7L0.20991Isolated non-canonical cWW pairDA LSU rRNAG1031A1032G1034*C1121G1122C1123cWWcWWcWW
10 IL_8VTW_0408VTW0.20091Isolated non-canonical cWW pair (H)1A LSU rRNAG1031A1032G1034*C1121G1122C1123cWWcWWcWW
11 IL_4RUM_0014RUM0.28641Isolated non-canonical cWW pairANiCo riboswitchG13A14C16*G88A89C90cWWcwWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAUG*CGC4
CAGC*GGG2
AAAG*CGU2
GAAA*UGC1
CAGU*GGG1
GAGC*GAC1
Non-Watson-Crick part of the motif
SequenceCounts
AU*G4
AA*G3
AG*G3
AG*A1

Release history

Release3.893.90
Date2024-10-092024-11-06
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated non-canonical cWW pair (7)
  • (3)
  • Isolated non-canonical cWW pair (H) (1)
    • Basepair signature
    cWW-cWW-cWW-cWW
    Heat map statistics
    Min 0.08 | Avg 0.25 | Max 0.44
    Help

    Coloring options:

    IL_5J7L_009:IL_5J7L_009 = 0IL_5J7L_009:IL_7D7V_003 = 0.3339IL_5J7L_009:IL_7D7W_003 = 0.3945IL_5J7L_009:IL_6TFF_003 = 0.3159IL_5J7L_009:IL_4K31_002 = 0.3565IL_5J7L_009:IL_4K31_003 = 0.335IL_5J7L_009:IL_4WF9_041 = 0.3408IL_5J7L_009:IL_7A0S_038 = 0.3817IL_5J7L_009:IL_5J7L_282 = 0.3553IL_5J7L_009:IL_8VTW_040 = 0.3788IL_5J7L_009:IL_4RUM_001 = 0.3629IL_7D7V_003:IL_5J7L_009 = 0.3339IL_7D7V_003:IL_7D7V_003 = 0IL_7D7V_003:IL_7D7W_003 = 0.2065IL_7D7V_003:IL_6TFF_003 = 0.1957IL_7D7V_003:IL_4K31_002 = 0.3336IL_7D7V_003:IL_4K31_003 = 0.3135IL_7D7V_003:IL_4WF9_041 = 0.3899IL_7D7V_003:IL_7A0S_038 = 0.4369IL_7D7V_003:IL_5J7L_282 = 0.4148IL_7D7V_003:IL_8VTW_040 = 0.4174IL_7D7V_003:IL_4RUM_001 = 0.3991IL_7D7W_003:IL_5J7L_009 = 0.3945IL_7D7W_003:IL_7D7V_003 = 0.2065IL_7D7W_003:IL_7D7W_003 = 0IL_7D7W_003:IL_6TFF_003 = 0.1669IL_7D7W_003:IL_4K31_002 = 0.2928IL_7D7W_003:IL_4K31_003 = 0.267IL_7D7W_003:IL_4WF9_041 = 0.3566IL_7D7W_003:IL_7A0S_038 = 0.4181IL_7D7W_003:IL_5J7L_282 = 0.4114IL_7D7W_003:IL_8VTW_040 = 0.4061IL_7D7W_003:IL_4RUM_001 = 0.4332IL_6TFF_003:IL_5J7L_009 = 0.3159IL_6TFF_003:IL_7D7V_003 = 0.1957IL_6TFF_003:IL_7D7W_003 = 0.1669IL_6TFF_003:IL_6TFF_003 = 0IL_6TFF_003:IL_4K31_002 = 0.1724IL_6TFF_003:IL_4K31_003 = 0.1547IL_6TFF_003:IL_4WF9_041 = 0.2441IL_6TFF_003:IL_7A0S_038 = 0.301IL_6TFF_003:IL_5J7L_282 = 0.2788IL_6TFF_003:IL_8VTW_040 = 0.2721IL_6TFF_003:IL_4RUM_001 = 0.2999IL_4K31_002:IL_5J7L_009 = 0.3565IL_4K31_002:IL_7D7V_003 = 0.3336IL_4K31_002:IL_7D7W_003 = 0.2928IL_4K31_002:IL_6TFF_003 = 0.1724IL_4K31_002:IL_4K31_002 = 0IL_4K31_002:IL_4K31_003 = 0.0809IL_4K31_002:IL_4WF9_041 = 0.1889IL_4K31_002:IL_7A0S_038 = 0.2308IL_4K31_002:IL_5J7L_282 = 0.2124IL_4K31_002:IL_8VTW_040 = 0.191IL_4K31_002:IL_4RUM_001 = 0.2602IL_4K31_003:IL_5J7L_009 = 0.335IL_4K31_003:IL_7D7V_003 = 0.3135IL_4K31_003:IL_7D7W_003 = 0.267IL_4K31_003:IL_6TFF_003 = 0.1547IL_4K31_003:IL_4K31_002 = 0.0809IL_4K31_003:IL_4K31_003 = 0IL_4K31_003:IL_4WF9_041 = 0.1683IL_4K31_003:IL_7A0S_038 = 0.2212IL_4K31_003:IL_5J7L_282 = 0.2099IL_4K31_003:IL_8VTW_040 = 0.2009IL_4K31_003:IL_4RUM_001 = 0.2864IL_4WF9_041:IL_5J7L_009 = 0.3408IL_4WF9_041:IL_7D7V_003 = 0.3899IL_4WF9_041:IL_7D7W_003 = 0.3566IL_4WF9_041:IL_6TFF_003 = 0.2441IL_4WF9_041:IL_4K31_002 = 0.1889IL_4WF9_041:IL_4K31_003 = 0.1683IL_4WF9_041:IL_4WF9_041 = 0IL_4WF9_041:IL_7A0S_038 = 0.1013IL_4WF9_041:IL_5J7L_282 = 0.1071IL_4WF9_041:IL_8VTW_040 = 0.1364IL_4WF9_041:IL_4RUM_001 = 0.2328IL_7A0S_038:IL_5J7L_009 = 0.3817IL_7A0S_038:IL_7D7V_003 = 0.4369IL_7A0S_038:IL_7D7W_003 = 0.4181IL_7A0S_038:IL_6TFF_003 = 0.301IL_7A0S_038:IL_4K31_002 = 0.2308IL_7A0S_038:IL_4K31_003 = 0.2212IL_7A0S_038:IL_4WF9_041 = 0.1013IL_7A0S_038:IL_7A0S_038 = 0IL_7A0S_038:IL_5J7L_282 = 0.0934IL_7A0S_038:IL_8VTW_040 = 0.1292IL_7A0S_038:IL_4RUM_001 = 0.2355IL_5J7L_282:IL_5J7L_009 = 0.3553IL_5J7L_282:IL_7D7V_003 = 0.4148IL_5J7L_282:IL_7D7W_003 = 0.4114IL_5J7L_282:IL_6TFF_003 = 0.2788IL_5J7L_282:IL_4K31_002 = 0.2124IL_5J7L_282:IL_4K31_003 = 0.2099IL_5J7L_282:IL_4WF9_041 = 0.1071IL_5J7L_282:IL_7A0S_038 = 0.0934IL_5J7L_282:IL_5J7L_282 = 0IL_5J7L_282:IL_8VTW_040 = 0.0812IL_5J7L_282:IL_4RUM_001 = 0.2235IL_8VTW_040:IL_5J7L_009 = 0.3788IL_8VTW_040:IL_7D7V_003 = 0.4174IL_8VTW_040:IL_7D7W_003 = 0.4061IL_8VTW_040:IL_6TFF_003 = 0.2721IL_8VTW_040:IL_4K31_002 = 0.191IL_8VTW_040:IL_4K31_003 = 0.2009IL_8VTW_040:IL_4WF9_041 = 0.1364IL_8VTW_040:IL_7A0S_038 = 0.1292IL_8VTW_040:IL_5J7L_282 = 0.0812IL_8VTW_040:IL_8VTW_040 = 0IL_8VTW_040:IL_4RUM_001 = 0.2295IL_4RUM_001:IL_5J7L_009 = 0.3629IL_4RUM_001:IL_7D7V_003 = 0.3991IL_4RUM_001:IL_7D7W_003 = 0.4332IL_4RUM_001:IL_6TFF_003 = 0.2999IL_4RUM_001:IL_4K31_002 = 0.2602IL_4RUM_001:IL_4K31_003 = 0.2864IL_4RUM_001:IL_4WF9_041 = 0.2328IL_4RUM_001:IL_7A0S_038 = 0.2355IL_4RUM_001:IL_5J7L_282 = 0.2235IL_4RUM_001:IL_8VTW_040 = 0.2295IL_4RUM_001:IL_4RUM_001 = 0IL_5J7L_009IL_7D7V_003IL_7D7W_003IL_6TFF_003IL_4K31_002IL_4K31_003IL_4WF9_041IL_7A0S_038IL_5J7L_282IL_8VTW_040IL_4RUM_001Discrepancy0.000.100.200.300.40
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