IL_8VTU_214

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTU_214 not in the Motif Atlas

Geometric match to IL_3W3S_003

Geometric discrepancy: 0.1866

The information below is about IL_3W3S_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8VTU|1|2A|C|1041
8VTU|1|2A|G|1042
8VTU|1|2A|C|1043
*
8VTU|1|2A|G|1112
8VTU|1|2A|U|1113
8VTU|1|2A|G|1114

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2H

50S ribosomal protein L6

Chain 2Z

50S ribosomal protein L25