IL_8VTV_039

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

8VTV|1|1A|U|1142, 8VTV|1|1A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTV_039 not in the Motif Atlas

Homologous match to IL_8VTW_038

Geometric discrepancy: 0.0386

The information below is about IL_8VTW_038

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.4

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8VTV|1|1A|C|1018
8VTV|1|1A|U|1019
8VTV|1|1A|A|1020
8VTV|1|1A|A|1021
8VTV|1|1A|G|1022
8VTV|1|1A|U|1023
8VTV|1|1A|G|1024
*
8VTV|1|1A|C|1140
8VTV|1|1A|U|1141
8VTV|1|1A|U|1142
8VTV|1|1A|A|1142|||A
8VTV|1|1A|A|1143
8VTV|1|1A|G|1144

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1N

50S ribosomal protein L13