Motif IL_57188.4 Version IL_57188.4 of this group appears in releases 3.87 to 3.90

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11	1-11	2-4	2-6	2-10	4-9	4-10	5-6	7-8
1	IL_4V9F_040	4V9F	0.0600	2	Kink-turn related	0	LSU rRNA	U	1115	U	1116	A	1117	A	1118	G	1119	U	1120	G	1121	*	C	1243	U	1244	A	1246	A	1248	cWW	ncSH		tWW	tWW		cSH	cWW
2	IL_8VTW_038	8VTW	0.0000	2	Kink-turn related	1A	LSU rRNA	C	1018	U	1019	A	1020	A	1021	G	1022	U	1023	G	1024	*	C	1140	U	1141	A	1142\|\|\|A	G	1144	cWW	ncSH		tWW	tWW	ntWW	cSH	cWW
3	IL_5J7L_280	5J7L	0.0617	1	Kink-turn related	DA	LSU rRNA	U	1018	U	1019	A	1020	A	1021	G	1022	U	1023	G	1024	*	C	1140	U	1141	A	1142	A	1144	cWW	ncSH		tWW	tWW	ntWW	cSH	cWW
4	IL_4WF9_039	4WF9	0.1786	1	Kink-turn related	X	LSU rRNA	U	1062	U	1063	A	1064	A	1065	G	1066	U	1067	G	1068	*	C	1184	U	1185	A	1186	A	1188	cWW						cSH	cWW
5	IL_7A0S_036	7A0S	0.3114	2	Kink-turn related	X	LSU rRNA	C	1029	U	1030	C	1031	A	1032	G	1033	U	1034	G	1035	*	C	1150	U	1151	A	1153	G	1155	cWW		ncSW				ncSH	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UUAAGUG*CUAAA	2
UUAAGUG*CUCAAA	1
CUAAGUG*CUUAAG	1
CUCAGUG*CUCAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAAGU*UAA	2
UAAGU*UCAA	1
UAAGU*UUAA	1
UCAGU*UCAA	1

Release history

Release	3.87	3.88	3.89	3.90
Date	2024-08-14	2024-09-11	2024-10-09	2024-11-06
Status	Updated, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Kink-turn related (5)
Basepair signature: cWW-cSH-tWW-L-tWW-cWW-cSH
Heat map statistics: Min 0.06 | Avg 0.15 | Max 0.32

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Coloring options: Nucleotide numbers

Motif IL_57188.4 Version IL_57188.4 of this group appears in releases 3.87 to 3.90 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_57188.4 Version IL_57188.4 of this group appears in releases 3.87 to 3.90

Download

Csv

Json