IL_8VTV_040

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGUAAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

8VTV|1|1A|U|1026, 8VTV|1|1A|A|1127, 8VTV|1|1A|U|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTV_040 not in the Motif Atlas

Geometric match to IL_7RQB_040

Geometric discrepancy: 0.0381

The information below is about IL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

8VTV|1|1A|G|1024
8VTV|1|1A|G|1025
8VTV|1|1A|U|1026
8VTV|1|1A|A|1027
8VTV|1|1A|A|1028
8VTV|1|1A|A|1029
8VTV|1|1A|G|1030
*
8VTV|1|1A|C|1124
8VTV|1|1A|G|1125
8VTV|1|1A|A|1126
8VTV|1|1A|A|1127
8VTV|1|1A|A|1128
8VTV|1|1A|A|1129
8VTV|1|1A|U|1130
8VTV|1|1A|G|1131
8VTV|1|1A|A|1132
8VTV|1|1A|U|1133
8VTV|1|1A|C|1135
8VTV|1|1A|G|1136
8VTV|1|1A|G|1137
8VTV|1|1A|G|1138
8VTV|1|1A|G|1139
8VTV|1|1A|C|1140

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1E

50S ribosomal protein L3

Chain 1N

50S ribosomal protein L13

Chain 1Q

50S ribosomal protein L16