3D structure

PDB id
8VTV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
GACAAC*GCUAAUC
Length
13 nucleotides
Bulged bases
8VTV|1|1a|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VTV_124 not in the Motif Atlas
Homologous match to IL_4LFB_009
Geometric discrepancy: 0.0916
The information below is about IL_4LFB_009
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_12745.1
Basepair signature
cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
1

Unit IDs

8VTV|1|1a|G|148
8VTV|1|1a|A|149
8VTV|1|1a|C|150
8VTV|1|1a|A|151
8VTV|1|1a|A|152
8VTV|1|1a|C|153
*
8VTV|1|1a|G|168
8VTV|1|1a|C|169
8VTV|1|1a|U|170
8VTV|1|1a|A|171
8VTV|1|1a|A|172
8VTV|1|1a|U|173
8VTV|1|1a|C|174

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1t
30S ribosomal protein S20

Coloring options:


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