3D structure

PDB id
8VTV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
GG*UCAGC
Length
7 nucleotides
Bulged bases
8VTV|1|1a|C|1200, 8VTV|1|1a|A|1201
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VTV_159 not in the Motif Atlas
Homologous match to IL_4LFB_045
Geometric discrepancy: 0.0716
The information below is about IL_4LFB_045
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_95583.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
11

Unit IDs

8VTV|1|1a|G|1057
8VTV|1|1a|G|1058
*
8VTV|1|1a|U|1199
8VTV|1|1a|C|1200
8VTV|1|1a|A|1201
8VTV|1|1a|G|1202
8VTV|1|1a|C|1203

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1c
30S ribosomal protein S3
Chain 1j
30S ribosomal protein S10
Chain 1n
30S ribosomal protein S14 type Z

Coloring options:


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