IL_8VTV_194

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8VTV|1|2A|G|801, 8VTV|1|2A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTV_194 not in the Motif Atlas

Homologous match to IL_8VTW_017

Geometric discrepancy: 0.0417

The information below is about IL_8VTW_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17470.7

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8VTV|1|2A|G|674
8VTV|1|2A|A|675
8VTV|1|2A|A|676
8VTV|1|2A|A|677
8VTV|1|2A|C|678
*
8VTV|1|2A|G|799
8VTV|1|2A|A|800
8VTV|1|2A|G|801
8VTV|1|2A|A|802
8VTV|1|2A|U|803
8VTV|1|2A|A|804
8VTV|1|2A|G|805
8VTV|1|2A|C|806

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15