IL_8VTV_235

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

8VTV|1|2A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTV_235 not in the Motif Atlas

Homologous match to IL_8VTW_062

Geometric discrepancy: 0.0603

The information below is about IL_8VTW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80287.1

Basepair signature

cWW-tSH-tHH-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

8VTV|1|2A|G|1526
8VTV|1|2A|G|1527
8VTV|1|2A|A|1528
8VTV|1|2A|A|1528|||A
8VTV|1|2A|G|1529
*
8VTV|1|2A|U|1540
8VTV|1|2A|G|1541
8VTV|1|2A|A|1542
8VTV|1|2A|C|1543
8VTV|1|2A|A|1544
8VTV|1|2A|A|1545
8VTV|1|2A|C|1546

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains