3D structure

PDB id
8VTV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
Length
16 nucleotides
Bulged bases
8VTV|1|2A|A|1938, 8VTV|1|2A|U|1944, 8VTV|1|2A|U|1963
QA status
Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VTV_249 not in the Motif Atlas
Homologous match to IL_8VTW_076
Geometric discrepancy: 0.0721
The information below is about IL_8VTW_076
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_66080.1
Basepair signature
cWW-cWW-tSH-L-cWW-L
Number of instances in this motif group
5

Unit IDs

8VTV|1|2A|C|1934
8VTV|1|2A|G|1935
8VTV|1|2A|A|1936
8VTV|1|2A|A|1937
8VTV|1|2A|A|1938
8VTV|1|2A|5MU|1939
8VTV|1|2A|U|1940
8VTV|1|2A|C|1941
8VTV|1|2A|5MC|1942
8VTV|1|2A|U|1943
8VTV|1|2A|U|1944
8VTV|1|2A|G|1945
*
8VTV|1|2A|C|1961
8VTV|1|2A|5MC|1962
8VTV|1|2A|U|1963
8VTV|1|2A|G|1964

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2
Chain 2a
Small subunit ribosomal RNA; SSU rRNA
Chain 2w
Transfer RNA; tRNA
Chain 2x
Transfer RNA; tRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.6679 s