IL_8VTV_319

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

8VTV|1|2a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTV_319 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1005

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

8VTV|1|2a|G|683
8VTV|1|2a|A|684
8VTV|1|2a|G|685
8VTV|1|2a|U|686
8VTV|1|2a|A|687
8VTV|1|2a|G|688
*
8VTV|1|2a|C|699
8VTV|1|2a|G|700
8VTV|1|2a|C|701
8VTV|1|2a|A|702
8VTV|1|2a|G|703
8VTV|1|2a|A|704
8VTV|1|2a|U|705
8VTV|1|2a|A|706
8VTV|1|2a|C|707

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11