3D structure

PDB id
8VTW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.35 Å

Loop

Sequence
CGAAGACAG*UCGAG
Length
14 nucleotides
Bulged bases
8VTW|1|1A|A|1046
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_90538.5
Basepair signature
cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
Number of instances in this motif group
6

Unit IDs

8VTW|1|1A|C|1043
8VTW|1|1A|G|1044
8VTW|1|1A|A|1045
8VTW|1|1A|A|1046
8VTW|1|1A|G|1047
8VTW|1|1A|A|1048
8VTW|1|1A|C|1049
8VTW|1|1A|A|1050
8VTW|1|1A|G|1051
*
8VTW|1|1A|U|1108
8VTW|1|1A|C|1109
8VTW|1|1A|G|1110
8VTW|1|1A|A|1111
8VTW|1|1A|G|1112

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1H
50S ribosomal protein L6

Coloring options:

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