IL_8VTW_041

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

8VTW|1|1A|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8VTW|1|1A|C|1043
8VTW|1|1A|G|1044
8VTW|1|1A|A|1045
8VTW|1|1A|A|1046
8VTW|1|1A|G|1047
8VTW|1|1A|A|1048
8VTW|1|1A|C|1049
8VTW|1|1A|A|1050
8VTW|1|1A|G|1051
*
8VTW|1|1A|U|1108
8VTW|1|1A|C|1109
8VTW|1|1A|G|1110
8VTW|1|1A|A|1111
8VTW|1|1A|G|1112

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1H

50S ribosomal protein L6