IL_8VTW_050

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_04395.1

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

3

Unit IDs

8VTW|1|1A|G|1319
8VTW|1|1A|C|1320
8VTW|1|1A|A|1321
8VTW|1|1A|A|1322
8VTW|1|1A|U|1323
*
8VTW|1|1A|A|1331
8VTW|1|1A|G|1332
8VTW|1|1A|C|1333

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1W

50S ribosomal protein L22

Chain 1X

50S ribosomal protein L23