IL_8VTW_101

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

8VTW|1|1A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.2

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8VTW|1|1A|U|2636
8VTW|1|1A|U|2637
8VTW|1|1A|G|2638
8VTW|1|1A|A|2639
8VTW|1|1A|G|2640
*
8VTW|1|1A|C|2774
8VTW|1|1A|A|2775
8VTW|1|1A|A|2776
8VTW|1|1A|G|2777
8VTW|1|1A|A|2778
8VTW|1|1A|U|2779
8VTW|1|1A|G|2780
8VTW|1|1A|A|2781
8VTW|1|1A|G|2782

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1N

50S ribosomal protein L13