IL_8VTW_134

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTW_134 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.0606

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8VTW|1|1a|C|504
8VTW|1|1a|G|505
8VTW|1|1a|G|506
8VTW|1|1a|C|507
8VTW|1|1a|C|508
8VTW|1|1a|A|509
8VTW|1|1a|A|510
8VTW|1|1a|C|511
*
8VTW|1|1a|G|540
8VTW|1|1a|G|541

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1d

30S ribosomal protein S4

Chain 1l

30S ribosomal protein S12