3D structure

PDB id
8VTW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.35 Å

Loop

Sequence
UACAAAG*CAAAAAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VTW_162 not in the Motif Atlas
Homologous match to IL_4LFB_051
Geometric discrepancy: 0.0778
The information below is about IL_4LFB_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09129.2
Basepair signature
cWW-L-R-tWH-L-R-L-tWW-cWW
Number of instances in this motif group
2

Unit IDs

8VTW|1|1a|U|1247
8VTW|1|1a|A|1248
8VTW|1|1a|C|1249
8VTW|1|1a|A|1250
8VTW|1|1a|A|1251
8VTW|1|1a|A|1252
8VTW|1|1a|G|1253
*
8VTW|1|1a|C|1284
8VTW|1|1a|A|1285
8VTW|1|1a|A|1286
8VTW|1|1a|A|1287
8VTW|1|1a|A|1288
8VTW|1|1a|A|1289
8VTW|1|1a|G|1290

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1g
30S ribosomal protein S7
Chain 1i
30S ribosomal protein S9
Chain 1j
30S ribosomal protein S10
Chain 1n
30S ribosomal protein S14 type Z
Chain 1u
30S ribosomal protein Thx

Coloring options:


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